PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK26618.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 196aa MW: 22746.5 Da PI: 9.5352

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK26618.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.4	5.5e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v s +++ PK26618.1 6 LPPGFRFHPTDEELVAYYLDRKITGQTIEL-EIIPEVDLYKCEPWDLPeKsYLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVQS-QRR 103 79**************************.99**********94345566888*********************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLv+y+grap+g +t+Wvmheyrl PK26618.1 104 PVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-64	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	60.845	6	158	IPR003441	NAC domain
Pfam	PF02365	1.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKITG QTIELEIIPE VDLYKCEPWD LPEKSYLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVQS QRRPVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLLDDSLGG TVSSTLKDSY ALCRVFKKTI QIPKCNKNEE NPDNNNINGR 180 NNTEKDNQST ALGIIX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-59	1	158	15	168	NAC domain-containing protein 19
3swm_B	2e-59	1	158	15	168	NAC domain-containing protein 19
3swm_C	2e-59	1	158	15	168	NAC domain-containing protein 19
3swm_D	2e-59	1	158	15	168	NAC domain-containing protein 19
3swp_A	2e-59	1	158	15	168	NAC domain-containing protein 19
3swp_B	2e-59	1	158	15	168	NAC domain-containing protein 19
3swp_C	2e-59	1	158	15	168	NAC domain-containing protein 19
3swp_D	2e-59	1	158	15	168	NAC domain-containing protein 19
4dul_A	2e-59	1	158	12	165	NAC domain-containing protein 19
4dul_B	2e-59	1	158	12	165	NAC domain-containing protein 19
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092473.1	1e-120	NAC domain-containing protein 78
Swissprot	Q9FFI5	6e-88	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	W9RD25	1e-120	W9RD25_9R
STRING	VIT_19s0085g00950.t01	1e-109	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10508	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	4e-97	NAC domain containing protein 20